PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_73658DB91.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 241aa    MW: 25554.7 Da    PI: 5.5381
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_73658DB91.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.73.5e-53431481101
                  NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 
                            ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa+
  Traes_4AS_73658DB91.1  43 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAI 130
                            89*****997665555689********************************************************************* PP

                  NF-YC  84 trtdifdflvdivprdel 101
                            +rtd+fdflvdivpr+e 
  Traes_4AS_73658DB91.1 131 ARTDVFDFLVDIVPREEA 148
                            ***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.21E-3228139IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.5E-3759130IPR009072Histone-fold
PfamPF008082.7E-2067130IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MENHQLPYTT QPPATGASGA PLPGVPGPPP VPHHHLLQQQ QAQLQAFWAY QRQEAERASA  60
SDFKNHQLPL ARIKKIMKAD EDVRMISAEA PVLFAKACEL FILELTIRSW LHAEENKRRT  120
LQRNDVAAAI ARTDVFDFLV DIVPREEAKE EPGSAALGFA AGGVGAAGGG PAAGLPYYYP  180
PMGQPAAPMM PAWHVPAWEP AWQQGGAGVD QGAGSFGEEG QGFTGGHGGS AGFPPGPPSS  240
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-434414519119HapE
4g92_C2e-434414519119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123RRTLQRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9027950.0GU902795.1 Triticum monococcum nuclear transcription factor Y subunit C11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558340.11e-113PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9FMV51e-75NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLW5DXZ71e-175W5DXZ7_WHEAT; Uncharacterized protein
STRINGMLOC_69830.11e-172(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73453551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.26e-63nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]